University of Patras - Computer Engineering and Informatics Department

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Computational Biology and Bioinformatics Group

Publications

30.09.2012: Computational Methods and Algorithms for Mass Spectrometry Based Differential Proteomics: Recent Advances, Perspectives and Open Problems (Journal paper)

V. Spyropoulou, M. Rapsomaniki, K. Theofilatos, S. Papadimitriou, S. Likothanassis, A. Tsakalidis and S. Mavroudi, “Computational Methods and Algorithms for Mass Spectrometry Based Differential Proteomics: Recent Advances, Perspectives and Open Problems”, Current Proteomics, vol. 9, issue 3, pp. 143-159, 2012.

20.09.2012: Efficient Computational Prediction and Scoring of Human Protein-Protein Interactions Using a Novel Gene Expression Programming Methodology (Conference paper)

K. Theofilatos, C. Dimitrakopoulos, M. Antoniou, E. Georgopoulos, S. Papadimitriou, S. Likothanassis and S. Mavroudi, Efficient Computational Prediction and Scoring of Human Protein-Protein Interactions Using a Novel Gene Expression Programming Methodology EANN 2012, 20-23 September 2012, London, United Kingdom.

01.06.2012: Efficient Computational Construction of Weighted Protein-Protein Interaction Networks Using Adaptive Filtering Techniques Combined with Natural Selection-Based Heuristic Algorithms (Journal paper)

C. Dimitrakopoulos, K. Theofilatos, E. Georgopoulos, S. Likothanassis, A. Tsakalidis ans S. Mavroudi, “Efficient Computational Construction of weighted Protein-Protein Interaction Networks by Using Adaptive Filtering Techniques Combined with Natural Selection-Based Heuristic Algorithms”, International Journal of Systems Biology and Biomedical Technologies (IJSBBT), Vol. 1, issue 2, pp. 20-34, 2012.

31.05.2012: Predicting Human miRNA Target Genes Using a Novel Evolutionary Methodology (Conference paper)

A. Korfiati, D., Kleftogiannis, K. Theofilatos, S. Likothanassis, A. Tsakalidis and S. Mavroudi, “Predicting Human miRNA Target Genes Using a Novel Evolutionary Methodology”, Artificial Intelligence: Theories, Models and Applications, 8th Hellenic Conference on AI, SETN 2012 Lamia, Greece, May 2012

01.12.2011: Computational Approaches for the Prediction of Protein-Protein Interactions: A Survey (Journal paper)

K. Theofilatos, C.Dimitrakopoulos, A. Tsakalidis, S. Likothanassis, S. Papadimitriou, S. Mavroudi, Current Bioinformatics, Volume 6, No. 4, 2011.

05.11.2010: A New Hybrid Method for Predicting Protein Interactions Using Genetic Algorithms and Extended Kalman Filters (Conference paper)

K. Theofilatos C., Dimitrakopoulos, A. Tsakalidis, S. Likothanassis, S. Mavroudi, 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010), Corfu, Greece.

05.11.2010: A novel embedded pre-miRNA classification approach for the prediction of microRNA genes (Conference paper)

K. Theofilatos, D. Kleftogiannis, M. Rapsomaniki, V. Haidinis, S. Likothanassis, A. Tsakalidis, S. Mavroudi, 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010), Corfu, Greece.

05.11.2010: A Novel Pipeline Method For The Preprocessing Of Mass Spectrometry Proteomics Data (Conference paper)

Μ. Rapsomaniki, P. Zerefos, K. Theofilatos, A. Tsakalidis, S. Likothanassis, S. Mavroudi, 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010), Corfu, Greece.

16.06.2009: GIBA: A clustering tool for detecting protein complexes (Journal paper)

C. Moschopoulos, G.A. Pavlopoulos, R. Schneider, S. Likothanassis, S. Kossida, BMC Bioinformatics 10 (SUPPL. 6), 2009.

15.01.2009: Dealing with large datasets using an artificial intelligence clustering tool (Journal paper)

C. Moschopoulos, P. Tsiatsis, G. Beligiannis, D. Fotakis, S. Likothanassis, Studies in Computational Intelligence 166, pp. 105-120, 2009.